EDDYMOTION_Correct

Eddy Motion correction, supporting single image eddy correction as well as with susceptibility correction

Command:: dmriprep
Module version:: 0.1
Module type:: prep
Attributes:: deform_image
Notes:: EDDYMOTION_Correct README
Source:: dtiplayground/dmri/preprocessing/modules/EDDYMOTION_Correct

Protocol options

estimateMoveBySusceptibility

Estimate move by susceptibility

Type:: boolean
Default:: true

interpolateBadData

Interpolate bad data (–repol)

Type:: boolean
Default:: true

dataIsShelled

If the data is shelled, check this to be true

Type:: boolean
Default:: true

bRange

B-values within this range of each other are treated as the same shell (eddy –b_range). Keeps close shells from being merged. Set to 0 to use eddy’s default. Ignored by eddy versions without –b_range.

Type:: integer
Default:: 24

qcReport

Generate QC report from FSL

Type:: boolean
Default:: false