SLICE_Check

Slicewise correlation check to exclude problematic gradient volumes

Command:

dmriprep

Module version:

0.1

Module type:

prep

Attributes:

exclude_gradients

Notes:

SLICE_Check README

Source:

dtiplayground/dmri/preprocessing/modules/SLICE_Check

Protocol options

bSubregionalCheck

Check for sub regional images

Type:

boolean

Default:

false

subregionalCheckRelaxationFactor

Set the relaxation factor if sub regional check is selected

Type:

float

Default:

1.1

Used when:

bSubregionalCheck is True

checkTimes

How many times to check

Type:

integer

Default:

0

headSkipSlicePercentage

The percentage of front end indices to ignore due to small signals at the ends

Type:

float

Default:

0.1

tailSkipSlicePercentage

The percentage of rear end indices to ignore due to small signals at the ends

Type:

float

Default:

0.1

correlationDeviationThresholdbaseline

Correlation’s Deviation Threshold Baseline

Type:

float

Default:

3.0

correlationDeviationThresholdgradient

Correlation’s Deviation Threshold Gradient

Type:

float

Default:

3.5

quadFit

Quadratic fit of stdev multiple between baseline and gradients

Type:

boolean

Default:

true