SUSCEPTIBILITY_Correction

Susceptibility correction with FSL, 2 phase-encoded images are required to use this module

Command:

dmriprep

Module version:

0.1

Module type:

prep

Attributes:

deform_image, multi_input

Notes:

SUSCEPTIBILITY_Correction README

Source:

dtiplayground/dmri/preprocessing/modules/SUSCEPTIBILITY_Correct

Protocol options

phaseEncodingAxis

Phase encoding axis (list of axis index of phase encoding (0,1,2)),e.g. 0 - rl, 1 - ap(fh), 2 - si

Type:

number

Default:

1

phaseEncodingValue

Phase encoding value (real number)

Type:

float

Default:

0.0924

configurationFilePath

FSL topup configuration file path

Type:

filepath-remote

Default:

$CONFIG_DIR/parameters/fsl/fsl_regb02b0.cnf